Synteny Search

Synteny is generated based on the detection of blocks having collinear genes between two genome assemblies. The protocol in Tripal Synview is used with blastp (evalue 1e-10, max_target_hits 5, max_hsps 1) for alignment and MCScanX (default settings) for block detection.

Select the reference genome and scaffold/contig and the genome to compare. The lookup table for chromosome name to NCBI sequence accession ID is available here.