Cannabis sativa (Purple Kush, pkv5)

Summary
Publication
Cross Reference
Summary
Resource Type
Organism
Abbreviation
pkv5
Genus
Cannabis
Species
sativa (Purple Kush, pkv5)
Common Name
Cannabis sativa (Purple Kush, pkv5)
Description

GCA_000230575.5 Purple Kush is a marijuana strain that is widely used for its medicinal effects.

Accessions chromosome assignment
Chromosome 1 CM010790.2
Chromosome 2 CM010792.2
Chromosome 3 CM010793.2
Chromosome 4 CM010794.2
Chromosome 5 CM010796.2
Chromosome 6 CM010797.2
Chromosome 7 CM010799.2
Chromosome 8 CM010795.2
Chromosome 9 CM010798.2
Chromosome 10 CM010791.2
Publication
  1. Laverty KU, Stout JM, Sullivan MJ, Shah H, Gill N, Holbrook L, Deikus G, Sebra R, Hughes TR, Page JE, van Bakel H. A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci.. Genome research. 2019 01; 29(1):146-156.
  2. van Bakel H, Stout JM, Cote AG, Tallon CM, Sharpe AG, Hughes TR, Page JE. The draft genome and transcriptome of Cannabis sativa.. Genome biology. 2011 Oct 20; 12(10):R102.
Cross Reference
NCBI Assembly:GCA_000230575.5
Analysis
NameProgramDate Constructed
Interpro result pkgmv1InterProScanSep 8th, 2020
Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)21trichpkclone109Oct 15th, 2023
Interpro result canSat3 Purple KushInterProScanOct 18th, 2023
Reanalysis of 21 trichome RNA-Seq samples, PKV5R21T (TMM50 values)pkv5r21tMay 1st, 2024